2025 Publications

Panda P, Ferreira CR, Cooper BR, Schaser AJ, Aryal UK (2025) Multiplatform Lipid Analysis of the Brain of Aging Mice by Mass Spectrometry. J Proteome Res [J Proteome Res]

Panda P, Giri SJ, Sherman LA, Kihara D, Aryal UK (2025) Proteomic Analysis of Unicellular Cyanobacterium Crocosphaera subtropica ATCC 51142 under Extended Light or Dark Growth. J Proteome Res 24: 419-432 [J Proteome Res]

2024 Publications

Mohallem R, Schaser AJ, Aryal UK (2024) Molecular Signatures of Neurodegenerative Diseases Identified by Proteomic and Phosphoproteomic Analyses in Aging Mouse Brain. Mol Cell Proteomics 23 [Mol Cell Proteomics]

Mohallem, R., and Aryal, U. K. (2024) Nuclear Phosphoproteome Reveals Prolyl Isomerase PIN1 as a Modulator of Oncogene-Induced Senescence. Mol Cell Proteomics 23, 100715 [Mol Cell Proteomics]

2022 Publications

Kim, S. Q., et al. (2022). Global landscape of protein complexes in postprandial-state livers from diet-induced obese and lean mice. Biochemical and Biophysical Research Communications. [BBRC]

Kim, S. Q., et al. (2022). Multi-Omics Approach Reveals Dysregulation of Protein Phosphorylation Correlated with Lipid Metabolism in Mouse Non-Alcoholic Fatty Liver. Cells 11(7): 1172. [Cells]

2021 Publications

Mohallem, R., and Aryal, U.K. (2021). Quantitative Proteomics and Phosphoproteomics Reveal TNF-α-Mediated Protein Functions in Hepatocytes. Molecules 26, 5472. [Molecules]

Zembroski, A.S., Buhman, K.K., and Aryal, U.K. (2021). Proteome and phosphoproteome characterization of liver in the postprandial state from diet-induced obese and lean mice. Journal of Proteomics 232, 104072. [Journal of Proteomics]

2020 Publications

Mohallem, R., and Aryal, U.K. (2020). Regulators of TNFα mediated insulin resistance elucidated by quantitative proteomics. Sci Rep 10, 20878. [Sci Rep]

Aryal, U. K., Hedrick, V., Onyedibe, K. I., Sobreira, T. J. P., Sooreshjani, M. A., Wang, M., Gürsoy, U. K., & Sintim, H. O. (2020). Global Proteomic Analyses of STING‐Positive and ‐Negative Macrophages Reveal STING and Non‐STING Differentially Regulated Cellular and Molecular Pathways. PROTEOMICS – Clinical Applications, 14(3), 1900109. [Proteom. Clin. Appl.]

2019 Publications

Chan, H., Bhide, K. P., Vaidyam, A., Hedrick, V., Sobreira, T. J. P., Sors, T. G., Grant, R. W., & Aryal, U. K. (2019). Proteomic Analysis of 3T3-L1 Adipocytes Treated with Insulin and TNF-α. Proteomes, 7(4), 35. [Proteomes]

2018 Publications

Aryal, U. K., Ding, Z., Hedrick, V., Sobreira, T. J. P., Kihara, D., & Sherman, L. A. (2018). Analysis of Protein Complexes in the Unicellular Cyanobacterium Cyanothece ATCC 51142. Journal of Proteome Research, 17(11), 3628–3643.[J Proteome Res]

Connelly, K. E., Hedrick, V., Paschoal Sobreira, T. J., Dykhuizen, E. C., & Aryal, U. K. (2018). Analysis of Human Nuclear Protein Complexes by Quantitative Mass Spectrometry Profiling. PROTEOMICS, 18(11), 1700427.[Proteomics]

2017 Publications

Aryal, U. K., McBride, Z., Chen, D., Xie, J., & Szymanski, D. B. (2017). Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. Journal of Proteomics, 166, 8–18. [J. Proteomics]

2015 Publications

Aryal, U. K., Ross, A. R. S., & Krochko, J. E. (2015). Enrichment and Analysis of Intact Phosphoproteins in Arabidopsis Seedlings. PLOS ONE, 10(7), e0130763.[PLoS One]

2014 Publications

Aryal, U. K., Xiong, Y., McBride, Z., Kihara, D., Xie, J., Hall, M. C., & Szymanski, D. B. (2014). A Proteomic Strategy for Global Analysis of Plant Protein Complexes. The Plant Cell, 26(10), 3867–3882. [Plant Cell]

Aryal, U. K., Callister, S. J., McMahon, B. H., McCue, L.-A., Brown, J., Stöckel, J., Liberton, M., Mishra, S., Zhang, X., Nicora, C. D., Angel, T. E., Koppenaal, D. W., Smith, R. D., Pakrasi, H. B., & Sherman, L. A. (2014). Proteomic Profiles of Five Strains of Oxygenic Photosynthetic Cyanobacteria of the Genus Cyanothece. Journal of Proteome Research, 13(7), 3262–3276. [J Proteome Res.]

For a comprehensive list of publications, visit Dr. Uma Aryal’s Google Scholar or Pubmed pages